Bio::Emboss perl module version 5.0.0.1
=======================================

This module is an interface to the libraries of the EMBOSS package
(European Molecular Biology Open Software Suite).

With this module you can access EMBOSS databases and use EMBOSS
functions to manipulate your data. You can write perl programs that
look like any other EMBOSS program (command-line, web interface).

INSTALLATION

  You must define EMB_ROOT       -- EMBOSS installation path

  Probably also EMB_EXT_LIBS     -- libraries used for building EMBOSS

You can do this by modifying Makefile.PL or putting the proper values
on the command-line together with Makefile.PL:


   perl Makefile.PL [EMB_ROOT=/some/path] [EMB_EXT_LIBS="-L/abc -lxyz"]
   make

   make test                   # optional
   perl t/seqret.pl -help      # optional
   perl t/graphtest.pl         # optional

   make epods                  # optional, 
                               #   creates ajax documentation in
			       #   perl POD format
                               #   % perldoc Bio::Emboss::Ajax

   make install

DEPENDENCIES

This module requires an EMBOSS installation 
available for download at
http://emboss.sourceforge.net/

The module was tested with EMBOSS (version 5.0.0).
For EMBOSS-4.1.0 use Bio::Emboss-4.1.0
For EMBOSS-4.0.0 use Bio::Emboss-2.0.0
For EMBOSS-3.0.0 use Bio::Emboss-1.0.1
For older EMBOSS versions use Bio::Emboss-0.7.

COPYRIGHT AND LICENCE

Copyright (C) 2003-2007 Peter Ernst <pernst@cpan.org>

This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.